Publications

The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA
Thomas Roulé, Aurélie Christ, Nosheen Hussain, Ying Huang, Caroline Hartmann, Moussa Benhamed, Jose Gutierrez-Marcos, Federico Ariel, Martin Crespi, Thomas Blein
Regulatory long non-coding RNAs in root growth and development
Thomas Roulé, Martin Crespi, Thomas Blein
ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture
Nicolás Gaggion, Federico Ariel, Vladimir Daric, Éric Lambert, Simon Legendre, Thomas Roulé, Alejandra Camoirano, Diego H Milone, Martin Crespi, Thomas Blein, Enzo Ferrante
Sequence-unrelated long noncoding RNAs converged to modulate the activity of conserved epigenetic machineries across kingdoms
Camille Fonouni-Farde, Aurélie Christ, Thomas Blein, Juan Sebastián Ramírez-Prado, María Florencia Legascue, David Latrasse, Michaël Moison, Leandro Lucero, Lucía Ferrero, Daniel Gonzalez, Moussa Benhamed, Leandro Quadrana, Martin Crespi, Federico Ariel
Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation
Constanza Chialva, Thomas Blein, Martin Crespi, Diego Lijavetzky
Full Length Transcriptome Highlights the Coordination of Plastid Transcript Processing
Marine Guilcher, Arnaud Liehrmann, Chloé Seyman, Thomas Blein, Guillem Rigaill, Benoit Castandet, Etienne Delannoy
GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5′ and 3′ ends of its target genes
Soonkap Kim, Sophie J M Piquerez, Juan S Ramirez-Prado, Emmanouil Mastorakis, Alaguraj Veluchamy, David Latrasse, Deborah Manza-Mianza, Rim Brik-Chaouche, Ying Huang, Natalia Y Rodriguez-Granados, Lorenzo Concia, Thomas Blein, Sylvie Citerne, Abdelhafid Bendahmane, Catherine Bergounioux, Martin Crespi, Magdy M Mahfouz, Cécile Raynaud, Heribert Hirt, Vardis Ntoukakis, Moussa Benhamed
Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation
Thomas Blein, Coline Balzergue, Thomas Roulé, Marc Gabriel, Laetitia Scalisi, Tracy François, Céline Sorin, Aurélie Christ, Christian Godon, Etienne Delannoy, Marie-Laure Martin-Magniette, Laurent Nussaume, Caroline Hartmann, Daniel Gautheret, Thierry Desnos, Martin Crespi
Wheat chromatin architecture is organized in genome territories and transcription factories
Lorenzo Concia, Alaguraj Veluchamy, Juan S. Ramirez-Prado, Azahara Martin-Ramirez, Ying Huang, Magali Perez, Séverine Domenichini, Natalia Y. Rodriguez Granados, Soonkap Kim, Thomas Blein, Susan Duncan, Clement Pichot, Deborah Manza-Mianza, Caroline Juery, Etienne Paux, Graham Moore, Heribert Hirt, Catherine Bergounioux, Martin Crespi, Magdy M. Mahfouz, Abdelhafid Bendahmane, Chang Liu, Anthony Hall, Cécile Raynaud, David Latrasse, Moussa Benhamed
Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
Jérémie Bazin, Kiruthiga Mariappan, Yunhe Jiang, Thomas Blein, Ronny Voelz, Martin Crespi, Heribert Hirt
The Arabidopsis lncRNA ASCO modulates the transcriptome through interaction with splicing factors
Richard Rigo, Jérémie Bazin, Natali Romero-Barrios, Michaël Moison, Leandro Lucero, Aurélie Christ, Moussa Benhamed, Thomas Blein, Stéphanie Huguet, Celine Charon, Martin Crespi, Federico Ariel
High-quality genome sequence of white lupin provides insight into soil exploration and seed quality.
Bárbara Hufnagel, André Marques, Alexandre Soriano, Laurence Marquès, Fanchon Divol, Patrick Doumas, Erika Sallet, Davide Mancinotti, Sébastien Carrère, William Marande, Sandrine Arribat, Jean Keller, Cécile Huneau, Thomas Blein, Delphine Aimé, Malika Laguerre, Jemma Taylor, Veit Schubert, Matthew Nelson, Fernando Geu-Flores, Martin Crespi, Karine Gallardo, Pierre-Marc Delaux, Jérôme Salse, Hélène Bergès, Romain Guyot, Jérôme Gouzy, Benjamin Péret
R-Loop Mediated trans Action of the APOLO Long Noncoding RNA
Federico Ariel, Leandro Lucero, Aurélie Christ, Maria Florencia Mammarella, Teddy Jégu, Alaguraj Veluchamy, Kiruthiga Mariappan, David Latrasse, Thomas Blein, Chang Liu, Moussa Benhamed, Martin Crespi
Whole-genome landscape of Medicago truncatula symbiotic genes.
Yann Pecrix, S Evan Staton, Erika Sallet, Christine Lelandais-Brière, Sandra Moreau, Sébastien Carrère, Thomas Blein, Marie-Françoise Jardinaud, David Latrasse, Mohamed Zouine, Margot Zahm, Jonathan Kreplak, Baptiste Mayjonade, Carine Satgé, Magali Perez, Stéphane Cauet, William Marande, Céline Chantry-Darmon, Céline Lopez-Roques, Olivier Bouchez, Aurélie Bérard, Frédéric Debellé, Stéphane Muños, Abdelhafid Bendahmane, Hélène Bergès, Andreas Niebel, Julia Buitink, Florian Frugier, Moussa Benhamed, Martin Crespi, Jérôme Gouzy, Pascal Gamas
Nuclear Speckle RNA Binding Proteins Remodel Alternative Splicing and the Non-coding Arabidopsis Transcriptome to Regulate a Cross-Talk Between Auxin and Immune Responses
Jérémie Bazin, Natali Romero, Richard Rigo, Celine Charon, Thomas Blein, Federico Ariel, Martin Crespi
Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b regulates multiple developmental genes under benign and stress conditions
Waleed S Albihlal, Irabonosi Obomighie, Thomas Blein, Ramona Persad, Igor Chernukhin, Martin Crespi, Ulrike Bechtold, Philip M Mullineaux
Light dynamically regulates growth rate and cellular organisation of the Arabidopsis root meristem
Thomas Blein, Jasmin Duerr, Taras Pasternak, Thomas Haser, Thorsten Falk, Kun Liu, Franck A. Ditengou, Olaf Ronneberger, Klaus Palme
GDP-L-fucose is required for boundary definition in plants
Beatriz Gonçalves, Aude Maugarny-Calès, Bernard Adroher, Millán Cortizo, Nero Borrega, Thomas Blein, Alice Hasson, Emilie Gineau, Grégory Mouille, Patrick Laufs, Nicolas Arnaud
A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture
Teddy Jégu, Séverine Domenichini, Thomas Blein, Federico Ariel, Aurélie Christ, Soon-Kap Kim, Martin Crespi, Stéphanie Boutet-Mercey, Grégory Mouille, Mickaël Bourge, Heribert Hirt, Catherine Bergounioux, Cécile Raynaud, Moussa Benhamed
Rotation-invariant HOG descriptors using Fourier analysis in polar and spherical coordinates
Kun Liu, Henrik Skibbe, Thorsten Schmidt, Thomas Blein, Klaus Palme, Thomas Brox, Olaf Ronneberger
A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis
Céline Sorin, Marie Declerck, Aurélie Christ, Thomas Blein, Linnan Ma, Christine Lelandais-Brière, Maria Fransiska Njo, Tom Beeckman, Martin Crespi, Caroline Hartmann
The iRoCS Toolbox – 3D analysis of the plant root apical meristem at cellular resolution
Thorsten Schmidt, Taras Pasternak, Kun Liu, Thomas Blein, Dorothée Aubry-Hivet, Alexander Dovzhenko, Jasmin Duerr, William Teale, Franck A. Ditengou, Hans Burkhardt, Olaf Ronneberger, Klaus Palme
Variational attenuation correction in two-view confocal microscopy.
Thorsten Schmidt, Jasmin Dürr, Margret Keuper, Thomas Blein, Klaus Palme, Olaf Ronneberger
Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection
Thomas Blein, Véronique Pautot, Patrick Laufs
Modification of plant Rac/Rop GTPase signalling using bacterial toxin transgenes
Manoj K. Singh, Fugang Ren, Torsten Giesemann, Cristina Dal Bosco, Taras P. Pasternak, Thomas Blein, Benedetto Ruperti, Gudula Schmidt, Klaus Aktories, Arthur J. Molendijk, Klaus Palme
Evolution and Diverse Roles of the CUP-SHAPED COTYLEDON Genes in Arabidopsis Leaf Development  
Alice Hasson, Anne Plessis, Thomas Blein, Bernard Adroher, Stephen Grigg, Miltos Tsiantis, Arezki Boudaoud, Catherine Damerval, Patrick Laufs
Leaving the meristem behind: The genetic and molecular control of leaf patterning and morphogenesis
Alice Hasson, Thomas Blein, Patrick Laufs
Leaf development: what it needs to be complex
Thomas Blein, Alice Hasson, Patrick Laufs
Un mécanisme conservé à la base de la découpe des feuilles
Thomas Blein
A Conserved Molecular Framework for Compound Leaf Development
Thomas Blein, Amada Pulido, Aurélie Vialette-Guiraud, Krisztina Nikovics, Halima Morin, Angela Hay, Ida Elisabeth Johansen, Miltos Tsiantis, Patrick Laufs
Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thaliana
Smita Raman, Thomas Greb, Alexis Peaucelle, Thomas Blein, Patrick Laufs, Klaus Theres
The Balance between the MIR164A and CUC2 Genes Controls Leaf Margin Serration in Arabidopsis
Krisztina Nikovics, Thomas Blein, Alexis Peaucelle, Tetsuya Ishida, Halima Morin, Mitsuhiro Aida, Patrick Laufs