Article-Journal | Thomas Bleinhttps://thomas.blein.me/publication_types/article-journal/Article-JournalHugoBlox Kit (https://hugoblox.com)en-usThu, 01 Jan 2026 00:00:00 +0000https://thomas.blein.me/media/icon_hu_505882ef33579aed.pngArticle-Journalhttps://thomas.blein.me/publication_types/article-journal/ChronoRoot 2.0: an open AI-powered platform for 2D temporal plant phenotypinghttps://thomas.blein.me/publications/pmid-41762156/Thu, 01 Jan 2026 00:00:00 +0000https://thomas.blein.me/publications/pmid-41762156/Subunit 3 of the SUPERKILLER complex mediates microRNA172-directed cleavage of Nodule Number Control 1 in Medicago truncatulahttps://thomas.blein.me/publications/pmid-41015552/Mon, 01 Sep 2025 00:00:00 +0000https://thomas.blein.me/publications/pmid-41015552/From non-coding to chromatin regulators: VIVIpary and the rise of lncRNAs in plant biologyhttps://thomas.blein.me/publications/pmid-40542508/Fri, 01 Aug 2025 00:00:00 +0000https://thomas.blein.me/publications/pmid-40542508/Arabidopsis SGS3 is recruited to chromatin by CHR11 to select RNA that initiate siRNA productionhttps://thomas.blein.me/publications/pmid-40140371/Sat, 01 Mar 2025 00:00:00 +0000https://thomas.blein.me/publications/pmid-40140371/The transcription factor NF-YA10 determines the area explored by Arabidopsis thaliana roots and directly regulates LAZY geneshttps://thomas.blein.me/publications/pmid-40051141/Sat, 01 Mar 2025 00:00:00 +0000https://thomas.blein.me/publications/pmid-40051141/The Compact Root Architecture 2 systemic pathway is required for the repression of cytokinins and miR399 accumulation in Medicago truncatula N-limited plantshttps://thomas.blein.me/publications/pmid-38941269/Sun, 01 Sep 2024 00:00:00 +0000https://thomas.blein.me/publications/pmid-38941269/From environmental responses to adaptation: the roles of plant lncRNAshttps://thomas.blein.me/publications/pmid-38246143/Mon, 01 Apr 2024 00:00:00 +0000https://thomas.blein.me/publications/pmid-38246143/The long intergenic noncoding RNA ARES modulates root architecture in Arabidopsishttps://thomas.blein.me/publications/pmid-37409758/Sun, 01 Oct 2023 00:00:00 +0000https://thomas.blein.me/publications/pmid-37409758/Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis rootshttps://thomas.blein.me/publications/pmid-37345955/Sun, 01 Oct 2023 00:00:00 +0000https://thomas.blein.me/publications/pmid-37345955/Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting posttranscriptional transgene silencinghttps://thomas.blein.me/publications/pmid-36970782/Mon, 01 May 2023 00:00:00 +0000https://thomas.blein.me/publications/pmid-36970782/The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plantshttps://thomas.blein.me/publications/pmid-36038910/Mon, 01 Aug 2022 00:00:00 +0000https://thomas.blein.me/publications/pmid-36038910/The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABAhttps://thomas.blein.me/publications/pmid-35150931/Sun, 01 May 2022 00:00:00 +0000https://thomas.blein.me/publications/pmid-35150931/Regulatory long non-coding RNAs in root growth and developmenthttps://thomas.blein.me/publications/pmid-34940811/Tue, 01 Feb 2022 00:00:00 +0000https://thomas.blein.me/publications/pmid-34940811/Full Length Transcriptome Highlights the Coordination of Plastid Transcript Processinghttps://thomas.blein.me/publications/pmid-34681956/Fri, 01 Oct 2021 00:00:00 +0000https://thomas.blein.me/publications/pmid-34681956/ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecturehttps://thomas.blein.me/publications/pmid-34282452/Thu, 01 Jul 2021 00:00:00 +0000https://thomas.blein.me/publications/pmid-34282452/Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentationhttps://thomas.blein.me/publications/pmid-33603038/Mon, 01 Feb 2021 00:00:00 +0000https://thomas.blein.me/publications/pmid-33603038/Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvationhttps://thomas.blein.me/publications/pmid-32404413/Wed, 01 Jul 2020 00:00:00 +0000https://thomas.blein.me/publications/pmid-32404413/GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5' and 3' ends of its target geneshttps://thomas.blein.me/publications/pmid-32396165/Mon, 01 Jun 2020 00:00:00 +0000https://thomas.blein.me/publications/pmid-32396165/The Arabidopsis lncRNA ASCO modulates the transcriptome through interaction with splicing factorshttps://thomas.blein.me/publications/pmid-32285620/Fri, 01 May 2020 00:00:00 +0000https://thomas.blein.me/publications/pmid-32285620/Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsishttps://thomas.blein.me/publications/pmid-32302366/Wed, 01 Apr 2020 00:00:00 +0000https://thomas.blein.me/publications/pmid-32302366/Wheat chromatin architecture is organized in genome territories and transcription factorieshttps://thomas.blein.me/publications/pmid-32349780/Wed, 01 Apr 2020 00:00:00 +0000https://thomas.blein.me/publications/pmid-32349780/R-Loop Mediated trans Action of the APOLO Long Noncoding RNAhttps://thomas.blein.me/publications/pmid-31952990/Sun, 01 Mar 2020 00:00:00 +0000https://thomas.blein.me/publications/pmid-31952990/High-quality genome sequence of white lupin provides insight into soil exploration and seed qualityhttps://thomas.blein.me/publications/pmid-31980615/Wed, 01 Jan 2020 00:00:00 +0000https://thomas.blein.me/publications/pmid-31980615/Whole-genome landscape of Medicago truncatula symbiotic geneshttps://thomas.blein.me/publications/pmid-30397259/Sat, 01 Dec 2018 00:00:00 +0000https://thomas.blein.me/publications/pmid-30397259/Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b regulates multiple developmental genes under benign and stress conditionshttps://thomas.blein.me/publications/pmid-29697803/Tue, 01 May 2018 00:00:00 +0000https://thomas.blein.me/publications/pmid-29697803/Nuclear Speckle RNA Binding Proteins Remodel Alternative Splicing and the Non-coding Arabidopsis Transcriptome to Regulate a Cross-Talk Between Auxin and Immune Responseshttps://thomas.blein.me/publications/pmid-30186296/Mon, 01 Jan 2018 00:00:00 +0000https://thomas.blein.me/publications/pmid-30186296/GDP-L-fucose is required for boundary definition in plantshttps://thomas.blein.me/publications/pmid-29186469/Fri, 01 Dec 2017 00:00:00 +0000https://thomas.blein.me/publications/pmid-29186469/A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecturehttps://thomas.blein.me/publications/pmid-26457678/Thu, 01 Jan 2015 00:00:00 +0000https://thomas.blein.me/publications/pmid-26457678/Rotation-invariant HOG descriptors using Fourier analysis in polar and spherical coordinateshttps://thomas.blein.me/publications/openalex-w2008213480/Sat, 07 Jun 2014 00:00:00 +0000https://thomas.blein.me/publications/openalex-w2008213480/A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsishttps://thomas.blein.me/publications/pmid-24533947/Sun, 01 Jun 2014 00:00:00 +0000https://thomas.blein.me/publications/pmid-24533947/The iRoCS Toolbox--3D analysis of the plant root apical meristem at cellular resolutionhttps://thomas.blein.me/publications/pmid-24417645/Sat, 01 Mar 2014 00:00:00 +0000https://thomas.blein.me/publications/pmid-24417645/Variational attenuation correction in two-view confocal microscopyhttps://thomas.blein.me/publications/pmid-24350574/Sun, 01 Dec 2013 00:00:00 +0000https://thomas.blein.me/publications/pmid-24350574/Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissectionhttps://thomas.blein.me/publications/pmid-27137374/Mon, 01 Apr 2013 00:00:00 +0000https://thomas.blein.me/publications/pmid-27137374/Modification of plant Rac/Rop GTPase signalling using bacterial toxin transgeneshttps://thomas.blein.me/publications/pmid-23020817/Tue, 01 Jan 2013 00:00:00 +0000https://thomas.blein.me/publications/pmid-23020817/Evolution and diverse roles of the CUP-SHAPED COTYLEDON genes in Arabidopsis leaf developmenthttps://thomas.blein.me/publications/pmid-21258003/Sat, 01 Jan 2011 00:00:00 +0000https://thomas.blein.me/publications/pmid-21258003/Leaving the meristem behind: the genetic and molecular control of leaf patterning and morphogenesishttps://thomas.blein.me/publications/pmid-20371110/Thu, 01 Apr 2010 00:00:00 +0000https://thomas.blein.me/publications/pmid-20371110/Leaf development: what it needs to be complexhttps://thomas.blein.me/publications/pmid-19853496/Mon, 01 Feb 2010 00:00:00 +0000https://thomas.blein.me/publications/pmid-19853496/[A conserved mechanism at the base of leaf dissection]https://thomas.blein.me/publications/pmid-19951657/Sun, 01 Nov 2009 00:00:00 +0000https://thomas.blein.me/publications/pmid-19951657/A conserved molecular framework for compound leaf developmenthttps://thomas.blein.me/publications/pmid-19095941/Mon, 01 Dec 2008 00:00:00 +0000https://thomas.blein.me/publications/pmid-19095941/Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thalianahttps://thomas.blein.me/publications/pmid-18346190/Tue, 01 Jul 2008 00:00:00 +0000https://thomas.blein.me/publications/pmid-18346190/The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsishttps://thomas.blein.me/publications/pmid-17098808/Wed, 01 Nov 2006 00:00:00 +0000https://thomas.blein.me/publications/pmid-17098808/